• closedAccess   Exploring large macromolecular functional motions on clusters of multicore processors 

      López Blanco, José R.; Reyes, Ruymán; Aliaga Estellés, José Ignacio; Badía Sala, Rosa María; Chacón, Pablo; Quintana-Orti, Enrique S. Elsevier (2013-08)
      Normal modes in internal coordinates (IC) furnish an excellent way to model functional collective motions of macromolecular machines, but exhibit a high computational cost when applied to large-sized macromolecules. In ...
    • closedAccess   Leveraging task-parallelism in message-passing dense matrix factorizations using SMPSs 

      Martín, Alberto F.; Reyes, Ruymán; Badía Sala, Rosa María; Quintana-Orti, Enrique S. Elsevier (2014)
      In this paper, we investigate how to exploit task-parallelism during the execution of the Cholesky factorization on clusters of multicore processors with the SMPSs programming model. Our analysis reveals that the major ...