Listar por tema "Burrows-Wheeler Transform"

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    • openAccess   Concurrent and Accurate RNA Sequencing on Multicore Platforms 

      Martínez Pérez, Héctor; Tárraga, Joaquín; Medina, Ignacio; Barrachina Mir, Sergio; Castillo Catalán, María Isabel; Dopazo, Joaquín; Quintana-Orti, Enrique S. Departament d'Enginyeria i Ciència dels Computadors, Universitat Jaume I (2013-04-02)
      In this paper we introduce a novel parallel pipeline for fast and accurate mapping of RNA sequences on servers equipped with multicore processors. Our software, named HPG-aligner1, leverages the speed of the Burrows-Whe ...

    • openAccess   Highly sensitive and ultrafast read mapping for RNA-seq analysis 

      Barrachina Mir, Sergio; Castillo Catalán, María Isabel; Martínez Pérez, Héctor; Medina, Ignacio; Tárraga, Joaquín; Quintana-Orti, Enrique S.; Dopazo, Joaquín; Salavert Torres, José; Blanquer Espert, Ignacio; Paschall, J.; Hernández-García, V. Oxford University Press (2016)
      As sequencing technologies progress, the amount of data produced grows exponentially, shifting the bottleneck of discovery towards the data analysis phase. In particular, currently available mapping solutions for RNA-seq ...