Listar ICC_Reports por autoría "a97ef5f1-761a-40d5-b829-1071b6e0affc"
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Concurrent and Accurate RNA Sequencing on Multicore Platforms
Martínez Pérez, Héctor; Tárraga, Joaquín; Medina, Ignacio; Barrachina Mir, Sergio; Castillo Catalán, María Isabel; Dopazo, Joaquín; Quintana-Orti, Enrique S. Departament d'Enginyeria i Ciència dels Computadors, Universitat Jaume I (2013-04-02)In this paper we introduce a novel parallel pipeline for fast and accurate mapping of RNA sequences on servers equipped with multicore processors. Our software, named HPG-aligner1, leverages the speed of the Burrows-Whe ... -
Evaluation and Tuning of the Level 3 CUBLAS for Graphics Processors
Barrachina Mir, Sergio; Castillo Catalán, María Isabel; Igual, Francisco; Mayo, Rafael; Quintana-Orti, Enrique S. Departament d' Enginyeria i Ciència dels Computadors, Universitat Jaume I (2008-01)The increase in performance of the last generations of graphics processors (GPUs) has made this class of platform a coprocessing tool with remarkable success in certain types of operations. In this paper we evaluate the ... -
GLAME@lab: An M-script API for Linear Algebra Operations on Graphics Processors
Barrachina Mir, Sergio; Castillo Catalán, María Isabel; Igual, Francisco; Mayo, Rafael; Quintana-Orti, Enrique S. Departament d' Enginyeria i Ciència dels Computadors, Universitat Jaume I (2008-02)We propose two high-level application programming interfaces (APIs) to use a graphics processing unit (GPU) as a coprocessor for dense linear algebra operations. Combined with an extension of the FLAME API and an ... -
Out-of-Core Solution of Linear Systems on Graphic Processors
Castillo Catalán, María Isabel; Igual, Francisco; Mayo, Rafael; Rubio, Rafael; Quintana-Ortí, Gregorio; Quintana-Orti, Enrique S.; Van de Geijn, Robert A. Departament d' Enginyeria i Ciència dels Computadors, Universitat Jaume I (2008-05)We combine two high-level application programming interfaces to solve large-scale linear systems with the data stored on disk using current graphics processors. The result is a simple yet powerful tool that enables a ... -
Solving Dense Linear Systems on Graphics Processors
Barrachina Mir, Sergio; Castillo Catalán, María Isabel; Igual, Francisco; Mayo, Rafael; Quintana-Orti, Enrique S. Departament d' Enginyeria i Ciència dels Computadors, Universitat Jaume I (2008-02)We present several algorithms to compute the solution of a linear system of equations on a GPU, as well as general techniques to improve their performance, such as padding and hybrid GPU-CPU computation. We also show how ...