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Concurrent and Accurate RNA Sequencing on Multicore Platforms
(Departament d'Enginyeria i Ciència dels Computadors, Universitat Jaume I, 2013-04-02)
In this paper we introduce a novel parallel pipeline for fast and accurate mapping of RNA sequences on servers
equipped with multicore processors. Our software, named HPG-aligner1, leverages the speed of the Burrows-Whe ...
GLAME@lab: An M-script API for Linear Algebra Operations on Graphics Processors
(Departament d' Enginyeria i Ciència dels Computadors, Universitat Jaume I, 2008-02)
We propose two high-level application programming interfaces (APIs) to use a graphics processing unit (GPU) as a coprocessor
for dense linear algebra operations. Combined with an extension of the FLAME API and an ...
Out-of-Core Solution of Linear Systems on Graphic Processors
(Departament d' Enginyeria i Ciència dels Computadors, Universitat Jaume I, 2008-05)
We combine two high-level application programming interfaces to solve large-scale
linear systems with the data stored on disk using current graphics processors. The result
is a simple yet powerful tool that enables a ...
Solving Dense Linear Systems on Graphics Processors
(Departament d' Enginyeria i Ciència dels Computadors, Universitat Jaume I, 2008-02)
We present several algorithms to compute the solution of a linear system of equations
on a GPU, as well as general techniques to improve their performance, such as
padding and hybrid GPU-CPU computation. We also show how ...
Evaluation and Tuning of the Level 3 CUBLAS for Graphics Processors
(Departament d' Enginyeria i Ciència dels Computadors, Universitat Jaume I, 2008-01)
The increase in performance of the last generations of graphics processors (GPUs) has made this class of platform a
coprocessing tool with remarkable success in certain types of operations. In this paper we evaluate the ...