Acceleration of short and long DNA read mapping without loss of accuracy using suffix array
Impacto
Scholar |
Otros documentos de la autoría: Tárraga, Joaquín; Arnau, Vicente; Martínez Pérez, Héctor; Moreno, Raul; Cazorla, Diego; Salavert Torres, José; Blanquer Espert, Ignacio; Dopazo, Joaquín; Medina, Ignacio
Metadatos
Mostrar el registro completo del ítemcomunitat-uji-handle:10234/9
comunitat-uji-handle2:10234/7036
comunitat-uji-handle3:10234/8620
comunitat-uji-handle4:
INVESTIGACIONEste recurso está restringido
http://dx.doi.org/10.1093/bioinformatics/btu553 |
Metadatos
Título
Acceleration of short and long DNA read mapping without loss of accuracy using suffix arrayAutoría
Fecha de publicación
2014-08Editor
Oxford University PressISSN
1367-4803; 1460-2059Tipo de documento
info:eu-repo/semantics/articleVersión de la editorial
http://bioinformatics.oxfordjournals.org/content/30/23/3396.fullPalabras clave / Materias
Resumen
HPG Aligner applies suffix arrays for DNA read mapping. This implementation produces a highly sensitive and extremely fast mapping of DNA reads that scales up almost linearly with read length. The approach presented ... [+]
HPG Aligner applies suffix arrays for DNA read mapping. This implementation produces a highly sensitive and extremely fast mapping of DNA reads that scales up almost linearly with read length. The approach presented here is faster (over 20× for long reads) and more sensitive (over 98% in a wide range of read lengths) than the current state-of-the-art mappers. HPG Aligner is not only an optimal alternative for current sequencers but also the only solution available to cope with longer reads and growing throughputs produced by forthcoming sequencing technologies. [-]
Publicado en
Bioinformatics (2014) 30 (23)Derechos de acceso
Copyright © 2015 Oxford University Press
http://rightsstatements.org/vocab/InC/1.0/
info:eu-repo/semantics/restrictedAccess
http://rightsstatements.org/vocab/InC/1.0/
info:eu-repo/semantics/restrictedAccess
Aparece en las colecciones
- ICC_Articles [424]