FaST-LMM for Two-Way Epistasis Tests on High-Performance Clusters
Visualitza/
Impacte
Scholar |
Altres documents de l'autoria: Martínez Pérez, Héctor; Barrachina Mir, Sergio; Castillo Catalán, María Isabel; Quintana-Orti, Enrique S.; Rambla, Jordi; Farré, Xavier; Navarro, Arcadi
Metadades
Mostra el registre complet de l'elementcomunitat-uji-handle:10234/9
comunitat-uji-handle2:10234/7036
comunitat-uji-handle3:10234/8620
comunitat-uji-handle4:
INVESTIGACIONMetadades
Títol
FaST-LMM for Two-Way Epistasis Tests on High-Performance ClustersAutoria
Data de publicació
2018-08Editor
Mary Ann LiebertCita bibliogràfica
MARTÍNEZ, Héctor, et al. FaST-LMM for Two-Way Epistasis Tests on High-Performance Clusters. Journal of Computational Biology, 2018, 25.8: 862-870.Tipus de document
info:eu-repo/semantics/articleVersió de l'editorial
https://www.liebertpub.com/doi/10.1089/cmb.2018.0087Versió
info:eu-repo/semantics/draftParaules clau / Matèries
Resum
We introduce a version of the epistasis test in FaST-LMM for clusters of multithreaded processors. This new software maintains the sensitivity of the original FaST-LMM while delivering acceleration that is close to ... [+]
We introduce a version of the epistasis test in FaST-LMM for clusters of multithreaded processors. This new software maintains the sensitivity of the original FaST-LMM while delivering acceleration that is close to linear on 12–16 nodes of two recent platforms, with respect to improved implementation of FaST-LMM presented in an earlier work. This efficiency is attained through several enhancements on the original single-node version of FaST-LMM, together with the development of a message passing interface (MPI)-based version that ensures a balanced distribution of the workload as well as a multigraphics processing unit (GPU) module that can exploit the presence of multiple GPUs per node. [-]
Proyecto de investigación
Universitat Jaume I (TIN2014-53495-R) ; MINECO and FEDER (TIN2017-82972-R) ; Wellcome Trust Case Control Consortium (Award 076113)Drets d'accés
© 2018 Mary Ann Liebert, Inc., publishers. All rights reserved, USA and worldwide.
http://rightsstatements.org/vocab/InC/1.0/
info:eu-repo/semantics/openAccess
http://rightsstatements.org/vocab/InC/1.0/
info:eu-repo/semantics/openAccess
Apareix a les col.leccions
- ICC_Articles [430]