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FaST-LMM for Two-Way Epistasis Tests on High-Performance Clusters
dc.contributor.author | Martínez Pérez, Héctor | |
dc.contributor.author | Barrachina Mir, Sergio | |
dc.contributor.author | Castillo Catalán, María Isabel | |
dc.contributor.author | Quintana-Orti, Enrique S. | |
dc.contributor.author | Rambla, Jordi | |
dc.contributor.author | Farré, Xavier | |
dc.contributor.author | Navarro, Arcadi | |
dc.date.accessioned | 2018-12-20T10:52:30Z | |
dc.date.available | 2018-12-20T10:52:30Z | |
dc.date.issued | 2018-08 | |
dc.identifier.citation | MARTÍNEZ, Héctor, et al. FaST-LMM for Two-Way Epistasis Tests on High-Performance Clusters. Journal of Computational Biology, 2018, 25.8: 862-870. | ca_CA |
dc.identifier.uri | http://hdl.handle.net/10234/178309 | |
dc.description.abstract | We introduce a version of the epistasis test in FaST-LMM for clusters of multithreaded processors. This new software maintains the sensitivity of the original FaST-LMM while delivering acceleration that is close to linear on 12–16 nodes of two recent platforms, with respect to improved implementation of FaST-LMM presented in an earlier work. This efficiency is attained through several enhancements on the original single-node version of FaST-LMM, together with the development of a message passing interface (MPI)-based version that ensures a balanced distribution of the workload as well as a multigraphics processing unit (GPU) module that can exploit the presence of multiple GPUs per node. | ca_CA |
dc.format.extent | 8 p. | ca_CA |
dc.format.mimetype | application/pdf | ca_CA |
dc.language.iso | eng | ca_CA |
dc.publisher | Mary Ann Liebert | ca_CA |
dc.rights | © 2018 Mary Ann Liebert, Inc., publishers. All rights reserved, USA and worldwide. | ca_CA |
dc.rights.uri | http://rightsstatements.org/vocab/InC/1.0/ | * |
dc.subject | epistasis | ca_CA |
dc.subject | FaST-LMM | ca_CA |
dc.subject | Genome-Wide Association Studies (GWAS) | ca_CA |
dc.subject | multicore processors | ca_CA |
dc.subject | GPUs | ca_CA |
dc.subject | clusters of computers | ca_CA |
dc.title | FaST-LMM for Two-Way Epistasis Tests on High-Performance Clusters | ca_CA |
dc.type | info:eu-repo/semantics/article | ca_CA |
dc.identifier.doi | https://doi.org/10.1089/cmb.2018.0087 | |
dc.relation.projectID | Universitat Jaume I (TIN2014-53495-R) ; MINECO and FEDER (TIN2017-82972-R) ; Wellcome Trust Case Control Consortium (Award 076113) | ca_CA |
dc.rights.accessRights | info:eu-repo/semantics/openAccess | ca_CA |
dc.relation.publisherVersion | https://www.liebertpub.com/doi/10.1089/cmb.2018.0087 | ca_CA |
dc.type.version | info:eu-repo/semantics/draft | ca_CA |
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