• openAccess   Concurrent and Accurate RNA Sequencing on Multicore Platforms 

      Martínez Pérez, Héctor; Tárraga, Joaquín; Medina, Ignacio; Barrachina Mir, Sergio; Castillo Catalán, María Isabel; Dopazo, Joaquín; Quintana-Orti, Enrique S. Departament d'Enginyeria i Ciència dels Computadors, Universitat Jaume I (2013-04-02)
      In this paper we introduce a novel parallel pipeline for fast and accurate mapping of RNA sequences on servers equipped with multicore processors. Our software, named HPG-aligner1, leverages the speed of the Burrows-Whe ...
    • openAccess   Concurrent and Accurate Short Read Mapping on Multicore Processors 

      Martínez Pérez, Héctor; Tárraga, Joaquín; Medina, Ignacio; Barrachina Mir, Sergio; Castillo Catalán, María Isabel; Dopazo, Joaquín; Quintana-Orti, Enrique S. IEEE (2015-09)
      We introduce a parallel aligner with a work-flow organization for fast and accurate mapping of RNA sequences on servers equipped with multicore processors. Our software, HPG Aligner SA1, exploits a suffix array to rapidly ...